Database Search Algorithms

Search algorithms, post-searching processing, quantitation software, etc. Share and discuss software here.
Craig
E. Coli Lysate Member
E. Coli Lysate Member
Posts: 220
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Postby Craig » Wed Apr 18, 2012 11:00 am

Hi Ben,

The information for Peaks has been updated. I kept the link to the old paper though because our convention thus far has been to link to the first manuscript published about the software. And we will certainly look into expanding this and other Resource pages in the future.

-Craig

phojrup
Proton Member
Proton Member
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Joined: Mon Apr 30, 2012 3:41 am

Postby phojrup » Mon Apr 30, 2012 3:50 am

You may consider adding the GPMAW package (http://www.gpmaw.com) to the list of proteomics software. Although mainly for single protein analysis, it does offer an interface for X!Tandem, and has a lot of protein analysis and planning tools.

Peter

aky
Albumin Member
Posts: 89
Joined: Sat Sep 10, 2011 2:33 pm

Postby aky » Tue May 01, 2012 2:27 am

Protein Prospector can also be added to the list

Craig
E. Coli Lysate Member
E. Coli Lysate Member
Posts: 220
Joined: Sun Jun 26, 2011 6:49 pm

Postby Craig » Tue May 01, 2012 12:18 pm

GPMAW and ProteinProspector have been added. Thanks for the contributions.

Chaoswu
Glycine Member
Glycine Member
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Joined: Wed Feb 22, 2012 8:57 pm

Postby Chaoswu » Thu May 03, 2012 11:48 pm


Craig
E. Coli Lysate Member
E. Coli Lysate Member
Posts: 220
Joined: Sun Jun 26, 2011 6:49 pm

Postby Craig » Fri May 04, 2012 5:53 am

pFind is already in the list.

fmr33
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Proton Member
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Joined: Wed Apr 29, 2015 5:34 am

Postby fmr33 » Mon Jun 22, 2015 7:20 am

TPP-Trans Proteomic Pipeline from the MacCoss lab in Seattle Washington

http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP

sosborne
Carbon Member
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Proteomics Resources including Databases, Tools and Visualisation software

Postby sosborne » Mon Jun 22, 2015 10:07 am

Please note that there is pretty comprehensive list of >250 links to Proteomics Resources including Databases, Tools and Visualisation software at Pastel BioScience's website ...
http://www.pastelbioscience.co.uk/resources/databases.html

also take a look at the list of conferences, symposiums, workshops and seminars at ...
http://www.pastelbioscience.co.uk/resources/conferences.html

these are updated regularly but we would appreciate any updates, additions or comments.

Hope you find these resources useful :)


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