Extraction of GO annotation-Need help

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karthikskamath
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Extraction of GO annotation-Need help

Postby karthikskamath » Wed Nov 27, 2013 12:41 am

Hi,

I have a list of Uniprot Ids for which I need to extract GO annotation information. So far I have been doing it with the help of annotation node in Proteome Discoverer. Now I have a text file having about ~1000 Uniprot IDs for which I need to get GO information.

Previously I have used a tool STRAP . But the same tool doesn't seems to be working now. Can any one suggest a alternative tool which can retrieve annotations, perform the categorization and also give charts (Bar/Pie charts)?

Thanks.

Gajanan
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Postby Gajanan » Wed Nov 27, 2013 3:21 am

You can use BLAST 2 GO tools for GO function analysis.

tsbatth
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Postby tsbatth » Wed Nov 27, 2013 3:39 am

You can try http://www.innatedb.com/ . I've used that before, works OK.

Infinity
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Postby Infinity » Wed Nov 27, 2013 9:26 am



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