ProteinPilot Annotation Categories

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ProteinPilot Annotation Categories

Postby Dario » Wed Jan 28, 2015 6:00 pm

ProteinPilot gives each peptide a category. I have a dataset of six iTRAQ runs of biological replicates that I merged to look at the distribution of categories.

[td]auto[/td][td]auto - discordant peptide type[/td][td]auto - low confidence[/td][td]auto - no iTRAQ[/td][td]auto - shared MS/MS[/td][td]no quant - weak signal[/td]

What are typical percentages in each category from a successful experiment ?

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