ProteinPilot Annotation Categories

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Dario
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Joined: Wed Jan 28, 2015 5:43 pm

ProteinPilot Annotation Categories

Postby Dario » Wed Jan 28, 2015 6:00 pm

ProteinPilot gives each peptide a category. I have a dataset of six iTRAQ runs of biological replicates that I merged to look at the distribution of categories.

[table]
[tr]
[td]auto[/td][td]auto - discordant peptide type[/td][td]auto - low confidence[/td][td]auto - no iTRAQ[/td][td]auto - shared MS/MS[/td][td]no quant - weak signal[/td]
[/tr][tr]
[td]66895[/td][td]200964[/td][td]560426[/td][td]135[/td][td]155446[/td][td]107930[/td]
[/tr]
[/table]

What are typical percentages in each category from a successful experiment ?

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