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Combining normalized intensities of a peptide observed in two or more fractions

Posted: Tue Feb 07, 2017 2:26 pm
by august
Hello All,

Can anybody tell about how to normalize the intensities of a peptide observed in two or more fractions and combine them to a single value

Thanks

Re: Combining normalized intensities of a peptide observed in two or more fractions

Posted: Thu Feb 16, 2017 3:11 am
by Biomarker
Hi,

You can think about adding your MS files of different fractions into MaxQuant and specify experimental design. For more information refer to MaxQuant google group discussion orelse let me know, I can help you with that.

Good luck

Re: Combining normalized intensities of a peptide observed in two or more fractions

Posted: Thu Feb 23, 2017 11:45 am
by august
Thanks, I'll give Maxquant a try