A Proteomics Search Algorithm Specifically Designed for High-Resolution MS/MS

[AngelPDiz]

Thanks Craig again for links and information provided that is of most usseful. I was not aware about that way to calculate it...so I think is good time to me to start reading and learning about it.

Cheers,

Angel

[AngelPDiz]

Hi Craig,

Is it possible to get the different "protein-groups" outfiles obtained when using different maximun FDR values (at peptide level) but without the need of repeating again the same analysis (i.e. changing only the FDR cut-off)?.

Cheers,

Angel

[Craig]

Hi Craig,

Is it possible to get the different "protein-groups" outfiles obtained when using different maximun FDR values (at peptide level) but without the need of repeating again the same analysis (i.e. changing only the FDR cut-off)?.

Cheers,

Angel

Hi Angel,

This is not currently possible because it would require separate processing on the peptide list for each FDR level into protein groups, which the program isn't set up to do.

-Craig